Command line

src/commit.c

@@ -1,3 +1,4 @@
+#include <errno.h>
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
@@ -64,7 +65,10 @@ void free_commit(struct commit *commit)
 int commit()
 {
     struct tree index = {0};
-    load_index(&index);
+    if (load_index(&index) == REPO_NOT_INITIALIZED)
+    {
+        return REPO_NOT_INITIALIZED;
+    }
 
     struct object last_commit = {0};
     struct commit commit = {0};
@@ -127,10 +131,6 @@ int commit()
     }
     commit.tree = commit_tree_checksum;
 
-    debug_print("Author: %s", commit.author);
-    debug_print("Parent: %s", commit.parent);
-    debug_print("Tree: %s", commit.tree);
-
     struct object commit_obj = {0};
     commit_to_object(&commit, &commit_obj);
     write_object(&commit_obj);
@@ -149,10 +149,22 @@ int commit()
     save_index(&index);
 }
 
-void diff_commit_with_working_tree(struct commit *commit, int for_print)
+int diff_commit_with_working_tree(char *checksum, int for_print)
 {
+    struct object commit_obj = {0};
+    if (read_object(checksum, &commit_obj) == OBJECT_DOES_NOT_EXIST)
+    {
+        return OBJECT_DOES_NOT_EXIST;
+    }
+
+    if (commit_obj.object_type != COMMIT)
+        return WRONG_OBJECT_TYPE;
+
+    struct commit commit = {0};
+    commit_from_object(&commit, &commit_obj);
+
     struct object obj = {0};
-    read_object(commit->tree, &obj);
+    read_object(commit.tree, &obj);
 
     struct tree commit_tree = {0};
     get_tree(obj.content, &commit_tree);
@@ -177,18 +189,37 @@ void diff_commit_with_working_tree(struct commit *commit, int for_print)
     pclose(p);
 
     free_tree(&commit_tree);
+    free_commit(&commit);
     free_object(&obj);
+    free_object(&commit_obj);
 }
 
-void diff_commit(struct commit *commit_a, struct commit *commit_b, int for_print)
+int diff_commit(char* checksum_a, char* checksum_b, int for_print)
 {
-    struct object tree_obj_a, tree_obj_b;
+    struct object commit_a_obj = {0}, commit_b_obj = {0};
-    read_object(commit_a->tree, &tree_obj_a);
+    if (read_object(checksum_a, &commit_a_obj) == OBJECT_DOES_NOT_EXIST)
-    read_object(commit_b->tree, &tree_obj_b);
+    {
+        errno = 1;
+        return OBJECT_DOES_NOT_EXIST;
+    }
+    if (read_object(checksum_b, &commit_b_obj) == OBJECT_DOES_NOT_EXIST)
+    {
+        free_object(&commit_a_obj);
+        errno = 2;
+        return OBJECT_DOES_NOT_EXIST;
+    }
+
+    struct commit commit_a, commit_b;
+    commit_from_object(&commit_a, &commit_a_obj);
+    commit_from_object(&commit_b, &commit_b_obj);
+    
+    struct object tree_a_obj, tree_b_obj;
+    read_object(commit_a.tree, &tree_a_obj);
+    read_object(commit_b.tree, &tree_b_obj);
 
     struct tree tree_a, tree_b;
-    get_tree(tree_obj_a.content, &tree_a);
+    get_tree(tree_a_obj.content, &tree_a);
-    get_tree(tree_obj_b.content, &tree_b);
+    get_tree(tree_b_obj.content, &tree_b);
 
     rmdir(TMP"/a");
     rmdir(TMP"/b");
@@ -199,11 +230,16 @@ void diff_commit(struct commit *commit_a, struct commit *commit_b, int for_print
     dump_tree(TMP"/a", &tree_a);
     dump_tree(TMP"/b", &tree_b);
 
-    FILE *f = popen("diff -ruN "TMP"/a "TMP"/b > "LOCAL_REPO"/last.diff", "w");
+    FILE *f = popen("diff -ruN "TMP"/a "TMP"/b --color=always> "LOCAL_REPO"/last.diff", "w");
     pclose(f);
 
     free_tree(&tree_a);
     free_tree(&tree_b);
-    free_object(&tree_obj_a);
+    free_commit(&commit_a);
-    free_object(&tree_obj_b);
+    free_commit(&commit_b);
+    free_object(&tree_a_obj);
+    free_object(&tree_b_obj);
+    free_object(&commit_a_obj);
+    free_object(&commit_b_obj);
+    return 0;
 }

src/commit.h

@@ -5,8 +5,8 @@
 
 int commit_from_object(struct commit *commit, struct object *object);
 void free_commit(struct commit *commit);
-void diff_commit(struct commit *commit_a, struct commit *commit_b, int for_print);
+int diff_commit(char* checksum_a, char* checksum_b, int for_print);
-void diff_commit_with_working_tree(struct commit *commit, int for_print);
+int diff_commit_with_working_tree(char *checksum, int for_print);
 int commit();
 
 #endif // COMMIT_H

src/fs.c

@@ -194,6 +194,20 @@ defer:
     return result;
 }
 
+int remove_object(char *checksum)
+{
+    if(!local_repo_exist())
+    {
+        return REPO_NOT_INITIALIZED;
+    }
+    int result = FS_OK;
+
+    char path[strlen(OBJECTS_DIR) + strlen(checksum) + 2];
+    sprintf(path, "%s/%s", OBJECTS_DIR, checksum);
+
+    remove(path);
+}
+
 int create_dir(char *dir)
 {   
     struct stat buffer = {0};
@@ -361,7 +375,7 @@ int get_head_commit_checksum(char* checksum)
         return REPO_NOT_INITIALIZED;
     }
 
-    if(head_size == 0) return 0;
+    if(head_size == 0) return NO_CURRENT_HEAD;
 
     FILE *head_file = NULL;
     head_file = fopen(HEAD_FILE, "r");
@@ -383,7 +397,8 @@ int get_head_commit_checksum(char* checksum)
 int get_last_commit(struct object *commit)
 {
     char commit_checksum[DIGEST_LENGTH * 2 + 1];
-    get_head_commit_checksum(commit_checksum);
+    if (get_head_commit_checksum(commit_checksum) == NO_CURRENT_HEAD)
+        return FS_OK;
 
     int res = read_object(commit_checksum, commit);
     if (res != 0) return FS_ERROR;
@@ -465,24 +480,15 @@ int new_branch(char* branch_name)
     return FS_OK;
 }
 
-int revert_to(char* commit_checksum)
+int reset_to(char* commit_checksum)
 {
-    struct object obj = {0};
+    int res = diff_commit_with_working_tree(commit_checksum, 0);
-    read_object(commit_checksum, &obj);
+    if(res != FS_OK)
-
+        return res;
-    if(obj.object_type != COMMIT)
-        return WRONG_OBJECT_TYPE;
-
-    struct commit commit = {0};
-    commit_from_object(&commit, &obj);
-
-    diff_commit_with_working_tree(&commit, 0);
 
     FILE *p = popen("patch -p0 -R < "LOCAL_REPO"/last.diff > /dev/null", "w");
     pclose(p);
 
-    free_commit(&commit);
-    free_object(&obj);
     return FS_OK;
 }
 
@@ -501,15 +507,178 @@ int checkout_branch(char *branch)
     fread(commit_checksum, DIGEST_LENGTH * 2 + 1, 1, branch_head);
     fclose(branch_head);
 
-    revert_to(commit_checksum);
+    reset_to(commit_checksum);
 
     FILE *head_file = fopen(HEAD_FILE, "w");
     fwrite(branch_path, DIGEST_LENGTH * 2 + 1, 1, head_file);
     fclose(head_file);
 }
 
-void print_diff()
+int is_file_ignored(char *filename)
 {
-    FILE *p = popen("cat "LOCAL_REPO"/last.diff | less -R", "w");
+    struct stat buffer = {0};
-    pclose(p);
+    if (stat(IGNORE_FILE, &buffer) != 0)
+    {
+        return 0;
+    }
+    char content[buffer.st_size + 1];
+    memset(content, 0, buffer.st_size + 1);
+    FILE *ignore_file = fopen(IGNORE_FILE, "r");
+    fread(content, buffer.st_size, 1, ignore_file);
+    fclose(ignore_file);    
+
+    char *current_line = strtok(content, "\n");
+    
+    while(current_line != NULL)
+    {
+        if(strncmp(current_line, filename, strlen(current_line)) == 0)
+        {
+            return 1;
+        }
+        char alt[strlen(current_line) + 3];
+        sprintf(alt, "./%s", current_line);
+        if(strncmp(alt, filename, strlen(alt)) == 0)
+            return 1;
+        current_line = strtok(NULL, "\n");
+    }
+
+    return 0;
+}
+
+int add_file_to_index(struct tree *index, char *filename)
+{
+    if (is_file_ignored(filename)) {
+        return 0;
+    }
+    struct stat st = {0};
+    if (stat(filename, &st) != 0)
+    {
+        return FILE_NOT_FOUND;
+    }
+    if (!S_ISREG(st.st_mode))
+    {
+        DIR *dp;
+        struct dirent *ep;
+        dp = opendir(filename);
+        if (dp != NULL)
+        {
+            while ((ep = readdir(dp)) != NULL)
+            {
+                if (strcmp(ep->d_name, "..") != 0 && strcmp(ep->d_name, ".") != 0)
+                {
+                    char path[strlen(ep->d_name) + strlen(filename) + 2];
+                    if (strcmp(filename, "./") == 0)
+                        sprintf(path, "%s", ep->d_name);
+                    else if (strcmp(filename, ".") == 0)
+                        sprintf(path, "%s", ep->d_name);
+                    else if(filename[strlen(filename) - 1] == '/')
+                        sprintf(path, "%s%s", filename, ep->d_name);
+                    else
+                        sprintf(path, "%s/%s", filename, ep->d_name);
+                    add_file_to_index(index, path);
+                }
+            }
+            
+            closedir(dp);
+            return 0;
+        }
+    } else {
+        if (add_to_index(index, filename) == FILE_NOT_FOUND)
+            return FILE_NOT_FOUND;
+    }
+}
+
+int remove_file_from_index(struct tree *index, char *filename)
+{
+    if (is_file_ignored(filename))
+        return 0;
+
+    struct stat st = {0};
+    if (stat(filename, &st) != 0)
+        return FILE_NOT_FOUND;
+    if (!S_ISREG(st.st_mode))
+    {
+        DIR *dp;
+        struct dirent *ep;
+        dp = opendir(filename);
+        if (dp != NULL)
+        {
+            while ((ep = readdir(dp)) != NULL)
+            {
+                if (strcmp(ep->d_name, "..") != 0 && strcmp(ep->d_name, ".") != 0)
+                {
+                    char path[strlen(ep->d_name) + strlen(filename) + 2];
+                    if (strcmp(filename, "./") == 0)
+                        sprintf(path, "%s", ep->d_name);
+                    else if(filename[strlen(filename) - 1] == '/')
+                        sprintf(path, "%s%s", filename, ep->d_name);
+                    else
+                        sprintf(path, "%s/%s", filename, ep->d_name);
+                    remove_file_from_index(index, path);
+                }
+            }
+            
+            closedir(dp);
+            return 0;
+        }
+    } else {
+        remove_from_index(index, filename, 1);
+    }
+}
+
+int dump_log()
+{
+    struct object current_obj = {0};
+    get_last_commit(&current_obj);
+    struct commit current = {0};
+    commit_from_object(&current, &current_obj);
+
+    FILE *log_file = fopen(LOG_FILE, "w");
+    char checksum[DIGEST_LENGTH * 2 + 1];
+    hash_object(&current_obj, checksum);
+    fprintf(log_file, "commit %s\n", checksum);
+    fprintf(log_file, "Author: %s\n", current.author);
+    fprintf(log_file, "Tree: %s\n", current.tree);
+    fprintf(log_file, "\n");
+
+    while (strcmp(current.parent, " ") != 0)
+    {
+        free_object(&current_obj);
+        read_object(current.parent, &current_obj);
+        free_commit(&current);
+        commit_from_object(&current, &current_obj);
+
+        checksum[DIGEST_LENGTH * 2 + 1];
+        hash_object(&current_obj, checksum);
+        fprintf(log_file, "commit %s\n", checksum);
+        fprintf(log_file, "Author: %s\n", current.author);
+        fprintf(log_file, "Tree: %s\n", current.tree);
+        fprintf(log_file, "\n");
+    }
+    fclose(log_file);
+    return 0;
+}
+
+int dump_branches()
+{
+    if(!heads_dir_exist())
+    {
+        return REPO_NOT_INITIALIZED;
+    }
+
+    DIR *heads_dir = opendir(HEADS_DIR);
+    struct dirent *ep;
+    FILE *dump = fopen(TMP"/branches", "w");
+    if (heads_dir != NULL)
+    {
+        while ((ep = readdir(heads_dir)) != NULL)
+        {
+            if (strcmp(ep->d_name, "..") != 0 && strcmp(ep->d_name, ".") != 0)
+                fprintf(dump, "%s\n", ep->d_name);
+        }
+        fclose(dump);
+        closedir(heads_dir);
+        return 0;
+    } else 
+        return FS_ERROR;
 }

src/fs.h

@@ -9,6 +9,8 @@
 #define REFS_DIR LOCAL_REPO"/refs"
 #define HEADS_DIR REFS_DIR"/heads"
 #define HEAD_FILE LOCAL_REPO"/HEAD"
+#define IGNORE_FILE ".gitignore"
+#define LOG_FILE LOCAL_REPO"/log"
 
 #define TMP "/tmp"
 
@@ -26,26 +28,40 @@
 #define BRANCH_DOES_NOT_EXIST (-24)
 #define FILE_NOT_FOUND (-30)
 #define ENTRY_NOT_FOUND (-31)
+#define NO_CURRENT_HEAD (-40)
 
 int local_repo_exist();
 int index_exist();
 
 int init_repo();
+
 int blob_from_file(char *filename, struct object *object);
+
 int write_object(struct object *obj);
 int read_object(char *checksum, struct object *obj);
+int remove_object(char *checksum);
+
 int save_index(struct tree *tree);
 int load_index(struct tree *index);
+int add_file_to_index(struct tree *index, char *filename);
+int remove_file_from_index(struct tree *index, char *filename);
+
 int load_tree(char* checksum, struct tree *tree);
+
 int update_current_branch_head(char *new_head);
 int get_last_commit(struct object *commit);
+
 int tmp_dump(struct object *obj, char* filename);
 int init_tmp_diff_dir(char* dir);
+
 int new_branch(char* branch_name);
-void print_diff();
+int checkout_branch(char *branch);
-int revert_to(char* commit_checksum);
+
+int reset_to(char* commit_checksum);
 
 int create_dir(char *dir);
 int dump_tree(char *cwd, struct tree *tree);
+int dump_log();
+int dump_branches();
 
 #endif // FS_H

src/main.c

@@ -1,46 +1,267 @@
-// Requirements
+#include <errno.h>
-// commit
-// branching
-// revert
-// pull/push
-
 #include <stdio.h>
 #include <stdlib.h>
+#include <string.h>
+#include <sys/types.h>
+#include <sys/stat.h>
 #include <unistd.h>
 
 #include "includes.h"
-#include "objects.h"
+#include "commit.h"
-#include "types.h"
 #include "fs.h"
 #include "tree.h"
-#include "commit.h"
 
-int main(int argc, char** argv)
+#define ARGS_MAX_SIZE 256
+
+int print_help()
 {
-    // struct tree index = {0};
+    printf("Usage: cgit init\n");
-    // load_index(&index);
+    printf("       cgit add [FILES]\n");
+    printf("       cgit remove [FILES]\n");
+    printf("       cgit commit -m [MESSAGE]\n");
+    printf("       cgit diff <COMMIT1> [COMMIT2]\n");
+    printf("       cgit branch [BRANCH]\n");
+    printf("       cgit checkout [BRANCH]\n");
+    printf("       cgit reset <COMMIT>\n");
+    printf("       cgit log\n");
+    return 0;
+}
 
-    // add_to_index(&index, "src/commit.c");
+int pop_arg(int *argc, char ***argv, char *buf)
-    // add_to_index(&index, "src/commit.h");
+{  
-    // add_to_index(&index, "src/fs.c");
+    if (*argc == 0)
-    // add_to_index(&index, "src/fs.h");
+    {
+        return 1;
+    }
 
-    // save_index(&index);
+    strcpy(buf, *argv[0]);
-
+    *argc -= 1;
-    // commit();
+    *argv += 1;
-
-    struct object a = {0}, b = {0};
-    read_object("083fec39f677b81de863cb0b8575ac76e87b7bff", &a);
-    read_object("fb5d38457520619b6e2f3b162c2a21a22b531cb4", &b);
-
-    struct commit c_a, c_b;
-    commit_from_object(&c_a, &a);
-    commit_from_object(&c_b, &b);
-
-    diff_commit_with_working_tree(&c_b);
-
-    free_object(&a);
-    free_object(&b);
 
     return 0;
+}
+
+int add(int argc, char **argv)
+{
+    char buf[ARGS_MAX_SIZE];
+    int res;
+
+    res = pop_arg(&argc, &argv, buf);
+    if (res != 0)
+    {
+        printf("No file specified\n");
+        return 0;
+    }
+
+    struct tree index = {0};
+    if (load_index(&index) == REPO_NOT_INITIALIZED)
+    {
+        printf("Not a cgit repository\n");
+        return 128;
+    }
+
+    do {
+        if (add_file_to_index(&index, buf) == FILE_NOT_FOUND)
+        {
+            printf("File %s does not exist\n", buf);
+            return 1;
+        }
+        res = pop_arg(&argc, &argv, buf);
+    } while (res == 0);
+
+    save_index(&index);
+    free_tree(&index);
+
+    return 0;
+}
+
+int remove_cmd(int argc, char **argv) 
+{
+    char buf[ARGS_MAX_SIZE];
+    int res;
+
+    res = pop_arg(&argc, &argv, buf);
+    if (res != 0)
+    {
+        printf("No file specified\n");
+        return 0;
+    }
+
+    struct tree index = {0};
+    if (load_index(&index) == REPO_NOT_INITIALIZED)
+    {
+        printf("Not a cgit repository\n");
+        return 128;
+    }
+
+    do {
+        remove_file_from_index(&index, buf);
+        res = pop_arg(&argc, &argv, buf);
+    } while (res == 0);
+
+    save_index(&index);
+    free_tree(&index);
+
+    return 0;
+}
+
+int commit_cmd(int argc, char **argv)
+{
+    if (commit() == REPO_NOT_INITIALIZED)
+    {
+        printf("Not a cgit repository\n");
+        return 128;
+    }
+}
+
+int diff(int argc, char **argv)
+{
+    char checksum_a[ARGS_MAX_SIZE];
+    char checksum_b[ARGS_MAX_SIZE];
+
+    if(pop_arg(&argc, &argv, checksum_a) == 1)
+    {
+        printf("No commit specified\n");
+        return 0;
+    }
+
+    if(pop_arg(&argc, &argv, checksum_b) == 0)
+    {
+        if (diff_commit(checksum_a, checksum_b, 1) == OBJECT_DOES_NOT_EXIST)
+        {
+            if(errno == 1)
+            {
+                printf("Could not find commit %s\n", checksum_a);
+            } else if (errno == 2)
+            {
+                printf("Could not find commit %s\n", checksum_b);
+            }
+            return 0;
+        }
+    } else 
+    {
+        if (diff_commit_with_working_tree(checksum_a, 1) == OBJECT_DOES_NOT_EXIST)
+        {
+            printf("Could not find commit %s\n", checksum_a);
+            return 0;
+        }
+    }
+
+    FILE *p = popen("cat "LOCAL_REPO"/last.diff | less -R", "w");
+    pclose(p);
+    return 0;
+}
+
+int checkout(int argc, char **argv)
+{
+    char buf[ARGS_MAX_SIZE];
+
+    if(pop_arg(&argc, &argv, buf) == 1)
+    {
+        printf("No branch name specified\n");
+        return 0;
+    }
+
+    if (checkout_branch(buf) == BRANCH_DOES_NOT_EXIST)
+    {
+        printf("Branch %s does not exist, use cgit branch <name> to create one\n", buf);
+    }
+}
+
+int reset(int argc, char **argv)
+{
+    char buf[ARGS_MAX_SIZE];
+
+    if(pop_arg(&argc, &argv, buf) == 1)
+    {
+        printf("You must give a commit to reset to\n");
+        return 0;
+    }
+
+    int res = reset_to(buf);
+    if (res == OBJECT_DOES_NOT_EXIST)
+    {
+        printf("There is no commit named %s\n", buf);
+    } else if (res == WRONG_OBJECT_TYPE)
+    {
+        printf("Object %s is not a commit and thus cannot be reset to\n", buf);
+    }
+}
+
+int branch(int argc, char **argv)
+{
+    char buf[ARGS_MAX_SIZE];
+
+    if (pop_arg(&argc, &argv, buf) == 1)
+    {
+        if (dump_branches() == REPO_NOT_INITIALIZED)
+        {
+            printf("Not a cgit repository\n");
+            return 128;
+        }
+        FILE *p = popen("cat "TMP"/branches | less", "w");
+        pclose(p);
+        return 0;
+    } 
+
+    if (new_branch(buf) == BRANCH_ALREADY_EXIST)
+    {
+        printf("Branch %s already exist\n", buf);
+    }
+
+    return 0;
+}
+
+int log_cmd(int argc, char **argv)
+{
+    dump_log();
+    FILE *p = popen("cat "LOG_FILE" | less", "w");
+    pclose(p);
+}
+
+int main(int argc, char **argv)
+{
+    char cmd[ARGS_MAX_SIZE];
+    char buf[ARGS_MAX_SIZE];
+
+    pop_arg(&argc, &argv, cmd);
+    if(pop_arg(&argc, &argv, buf) == 1)
+    {
+        print_help();
+        return 0;
+    }
+
+    if (strcmp(buf, "init") == 0)
+    {
+        return init_repo();
+    } else if (strcmp(buf, "add") == 0)
+    {
+        return add(argc, argv);
+    } else if (strcmp(buf, "remove") == 0)
+    {
+        return remove_cmd(argc, argv);
+    } else if (strcmp(buf, "commit") == 0)
+    {
+        return commit_cmd(argc, argv);
+    } else if (strcmp(buf, "diff") == 0)
+    {
+        return diff(argc, argv);
+    } else if (strcmp(buf, "branch") == 0)
+    {
+        return branch(argc, argv);
+    } else if (strcmp(buf, "checkout") == 0)
+    {
+        return checkout(argc, argv);
+    } else if (strcmp(buf, "reset") == 0)
+    {
+        return reset(argc, argv);
+    } else if (strcmp(buf, "log") == 0)
+    {
+        return log_cmd(argc, argv);
+    } else if (strcmp(buf, "-h") == 0) {
+        return print_help();
+    } else {
+        printf("Unknown command %s, try using %s -h\n", buf, cmd);
+        return 0;
+    }
 }

src/tree.c

@@ -155,25 +155,32 @@ int add_to_tree(struct tree *tree, struct object *object, char *filename)
 
 int add_to_index(struct tree *index, char *filename)
 {
+    int result = FS_OK;
     struct object object = {0};
     if (blob_from_file(filename, &object) != FS_OK)
     {
         return FILE_NOT_FOUND;
     }
 
-    add_to_tree(index, &object, filename);
+    result = write_object(&object);
-    write_object(&object);
+    if (result == FS_OK)
-    free_object(&object);
-    return FS_OK;
-}
-
-int remove_from_index(struct tree *index, char *filename)
-{
-    if (!local_repo_exist() || !index_exist())
     {
-        return REPO_NOT_INITIALIZED;
+        add_to_tree(index, &object, filename);
+        defer(FS_OK);
     }
 
+    if (result == OBJECT_ALREADY_EXIST)
+    {
+        defer(FS_OK);
+    }
+
+defer:
+    free_object(&object);
+    return result;
+}
+
+int remove_from_index(struct tree *index, char *filename, int delete)
+{
     struct entry *entry = find_entry(index, filename);
     if (entry == NULL)
     {
@@ -196,6 +203,8 @@ int remove_from_index(struct tree *index, char *filename)
         entry->next->previous = entry->previous;
     }
 
+    if (delete)
+        remove_object(entry->checksum);
     index->entries_size = index->entries_size - 1;
     free_entry(entry);
     free(entry);
@@ -239,7 +248,7 @@ int add_object_to_tree(struct tree *tree, char* filename, struct object *source)
         if(top_folder != NULL)
         {
             load_tree(top_folder->checksum, &subtree);
-            remove_from_index(tree, top_folder->filename);
+            remove_from_index(tree, top_folder->filename, 0);
         }
 
         add_to_tree(&subtree, source, path_left);
@@ -248,7 +257,7 @@ int add_object_to_tree(struct tree *tree, char* filename, struct object *source)
 
         tree_to_object(&subtree, &result);
         write_object(&result);
-        remove_from_index(tree, filename);
+        remove_from_index(tree, filename, 0);
         add_to_tree(tree, &result, top_folder_name);
         free_object(&result);
         free_tree(&subtree);

src/tree.h

@@ -15,7 +15,7 @@ struct entry *find_entry(struct tree *index, char* filename);
 void get_tree(char* content, struct tree *tree);
 int add_to_tree(struct tree *tree, struct object *object, char *filename);
 int add_to_index(struct tree *index, char *filename);
-int remove_from_index(struct tree *index, char *filename);
+int remove_from_index(struct tree *index, char *filename, int delete);
 int tree_to_object(struct tree *tree, struct object *object);
 int add_object_to_tree(struct tree *tree, char* filename, struct object *source);